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dc.contributor.authorOguz, Ali Kemal
dc.contributor.authorYilmaz, Seda Tasir
dc.contributor.authorOygur, Cagdas Sahap
dc.contributor.authorCandar, Tuba
dc.contributor.authorSayin, Irmak
dc.contributor.authorKilicoglu, Sibel Serin
dc.contributor.authorErgun, Ihsan
dc.contributor.authorAtes, Askin
dc.contributor.authorOzdag, Hilal
dc.contributor.authorAkar, Nejat
dc.date.accessioned2019-09-18T10:08:30Z
dc.date.available2019-09-18T10:08:30Z
dc.date.issued2016
dc.identifier.issn1932-6203
dc.identifier.urihttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0149052&type=printable
dc.identifier.urihttp://hdl.handle.net/11727/3944
dc.description.abstractBehcet's disease (BD) is a chronic, relapsing, multisystemic inflammatory disorder with unanswered questions regarding its etiology/pathogenesis and classification. Distinct manifestation based subsets, pronounced geographical variations in expression, and discrepant immunological abnormalities raised the question whether Behcet's is "a disease or a syndrome". To answer the preceding question we aimed to display and compare the molecular mechanisms underlying distinct subsets of BD. For this purpose, the expression data of the gene expression profiling and association study on BD by Xavier et al (2013) was retrieved from GEO database and reanalysed by gene expression data analysis/visualization and bioinformatics enrichment tools. There were 15 BD patients (B) and 14 controls (C). Three subsets of BD patients were generated: MB (isolated mucocutaneous manifestations, n = 7), OB (ocular involvement, n = 4), and VB (large vein thrombosis, n = 4). Class comparison analyses yielded the following numbers of differentially expressed genes (DEGs); B vs C: 4, MB vs C: 5, OB vs C: 151, VB vs C: 274, MB vs OB: 215, MB vs VB: 760, OB vs VB: 984. Venn diagram analysis showed that there were no common DEGs in the intersection "MB vs C" boolean AND "OB vs C" boolean AND "VB vs C". Cluster analyses successfully clustered distinct expressions of BD. During gene ontology term enrichment analyses, categories with relevance to IL-8 production (MB vs C) and immune response to microorganisms (OB vs C) were differentially enriched. Distinct subsets of BD display distinct expression profiles and different disease associated pathways. Based on these clear discrepancies, the designation as "Behcet's syndrome" (BS) should be encouraged and future research should take into consideration the immunogenetic heterogeneity of BS subsets. Four gene groups, namely, negative regulators of inflammation (CD69, CLEC12A, CLEC12B, TNFAIP3), neutrophil granule proteins (LTF, OLFM4, AZU1, MMP8, DEFA4, CAMP), antigen processing and presentation proteins (CTSS, ERAP1), and regulators of immune response (LGALS2, BCL10, ITCH, CEACAM8, CD36, IL8, CCL4, EREG, NFKBIZ, CCR2, CD180, KLRC4, NFAT5) appear to be instrumental in BS immunopathogenesis.en_US
dc.language.isoengen_US
dc.relation.isversionof10.1371/journal.pone.0149052en_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectINHIBITORY RECEPTORen_US
dc.subjectGENE-EXPRESSIONen_US
dc.subjectMICROARRAY DATAen_US
dc.subjectGENOMEen_US
dc.subjectSUSCEPTIBILITYen_US
dc.subjectINFLAMMATIONen_US
dc.subjectIDENTIFICATIONen_US
dc.subjectASSOCIATIONen_US
dc.subjectWEBGESTALTen_US
dc.titleBehcet's: A Disease or a Syndrome? Answer from an Expression Profiling Studyen_US
dc.typearticleen_US
dc.relation.journalPLOS ONEen_US
dc.identifier.volume11en_US
dc.identifier.issue2en_US
dc.identifier.wos000371221500022en_US
dc.identifier.scopus2-s2.0-84960510688en_US
dc.contributor.pubmedID26890122en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergien_US


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